1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcccatgctgctgaggtagtcttttgagctgttcttttttcatatttttatcttttctttcacctctttatttatttattttaaaaacatatgagcagAATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTCAATGTCCTTGATTTCATACCGAGATTTGGTTGGTGTGGCCTATACAGAA
species | Oryza sativa |
transcript | LOC_Os01g70960.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACTATCCCTGGCCACATGCTGGCATCCTTAGCTCATATGATCATGCATC AATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTCEST: gi|88300536|gb|CI587340.1|CI587340
genomic: CACTATCCCTGGCCACATGCTGGCATCCTTAGCTCATATGATCATGCATCgtaagtttat ... atatgagcagAATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTC
EST: CACTATCCCTGGCCACATGCTGGCATCCTTAGCTCATATGATCATGCATC AATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTCEST: gi|55434402|gb|CV730323.1|CV730323
genomic: CACTATCCCTGGCCACATGCTGGCATCCTTAGCTCATATGATCATGCATCgtaagtttat ... atatgagcagAATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTC
EST: CACTATCCCTGGCCACATGCTGGCATCCTTAGCTCATATGATCATGCATC AATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTCEST: gi|8857821|gb|AU095139.1|AU095139
genomic: CACTATCCCTGGCCACATGCTGGCATCCTTAGCTCATATGATCATGCATCgtaagtttat ... atatgagcagAATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTC
EST: ACTATCCCTGGCCACATGCTGGCATCCTTAAGCTCATATGATCATGCATC AATAAAGGCGTGGCCATCAAGTTTATACACAAGTGGTGTGCCTCTTGTCAN
genomic: ACTATCCCTGGCCACATGCTGGCATCCTTA-GCTCATATGATCATGCATCgtaagtttat ... atatgagcagAATAA-GGCGTGGCCATCAAGTTTATACACAAGTG-TGTGCCTCTTGTCAC
atttttatcttttctttcacctctttatttatttattttaaaaacatatgagcagAATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTCAATGTCCTTGATTTCATACCGAGATTTGGTTGGTGTGGCCTATACAGAA
ttttctttcacctctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcccatgctgctgaggtagtcttttgagctgttcttttttcatatttttatcttttctttcacctctttatttatttattttaaaaacatatgagcagAATAAGGCGTGGCCATCAAGTTTATACACAAGTGTGTGCCTCTTGTCACTCAATGTCCTTGATTTCATACCGAGATTTGGTTGGTGTGGCCTATACAGAA
- - - -tgctgct
- - - - - - - - - - -tcttttg
- - - - - - - - - - - - - - agctgtt