1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcgttacatctactgatgcaaagttaaataggagtataattgtgatgcaagtctgcaatcctgaaattttgatccctctgtttgtgatgcttgatacagCATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCATTTCGTCCATCT
species | Oryza sativa |
transcript | LOC_Os01g70960.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAG CATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCATEST: gi|88300536|gb|CI587340.1|CI587340
genomic: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAGgtattcgttc ... cttgatacagCATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCAT
EST: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAG CATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCATEST: gi|8956916|gb|BE230719.1|BE230719
genomic: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAGgtattcgttc ... cttgatacagCATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCAT
EST: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAG CATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCATEST: gi|88424277|gb|CI581832.1|CI581832
genomic: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAGgtattcgttc ... cttgatacagCATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCAT
EST: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAG CATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCATEST: gi|55434402|gb|CV730323.1|CV730323
genomic: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAGgtattcgttc ... cttgatacagCATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCAT
EST: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAG CATTGTAAATGGCTGCTGGGATGGGTCATCAGTCAGCTTTTGAAGAAAGCAEST: gi|8857821|gb|AU095139.1|AU095139
genomic: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAGgtattcgttc ... cttgatacagCATTGTAAATGGCTGCTGGGA-GGGGCATCAGTCAGCTTTTGAAGAAAGCA
EST: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAG CATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCAT
genomic: ACCTCCTCCTTCCACCTGCCTCCATCATCGCTGCTTGAATCGATCCGAAGgtattcgttc ... cttgatacagCATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCAT
atgcaagtctgcaatcctgaaattttgatccctctgtttgtgatgcttgatacagCATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCATTTCGTCCATCT
aaattttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgttacatctactgatgcaaagttaaataggagtataattgtgatgcaagtctgcaatcctgaaattttgatccctctgtttgtgatgcttgatacagCATTGTAAATGGCTGCTGGGAGGGGCATCAGTCAGCTTTTGAAGAAAGCATTTCGTCCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -catctac
- - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcaat