1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAGGGTCAGTCCCCGTGGTACGACAACCTCTGCCGTCCTGTCACCGATTTGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctacactacttatttcttttgctctcttgcaccttgttctgaatctgcaatcctcattgctgactgtgtccctatggcaatgcag
species | Oryza sativa |
transcript | LOC_Os01g70170.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACCAGCAACCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|58611405|gb|CK039117.1|CK039117
genomic: CACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|33797865|gb|CF324792.1|CF324792
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|29688089|gb|CB684364.1|CB684364
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|58590038|gb|CF988346.1|CF988346
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCGGGCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|58586927|gb|CF985235.1|CF985235
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGGGCGTGGAGTCACCAGCAACCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|58595087|gb|CF993395.1|CF993395
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGGGTCACCAGCAAGCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|58589391|gb|CF987699.1|CF987699
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|58586227|gb|CF984535.1|CF984535
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCGCCAGCAACCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|33666864|gb|CF297831.1|CF297831
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAGEST: gi|3107545|gb|D43285.1|D43285
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
EST: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCA ATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
genomic: TGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctaca ... ggcaatgcagATTTTCCAGAAAGCCATCTCGACTTCCAATGCATACGATGACCAGTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGGGTCAGTCCCCGTGGTACGACAACCTCTGCCGTCCTGTCACCGATTTGCTGCCCCTTATTGGCAGCGGCGTCCGTGGAGTCACCAGCAACCCATCAgtacgctacactacttatttcttttgctctcttgcaccttgttctgaatctgcaatcctcattgctgactgtgtccctatggcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG