1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tacttgcgtgtgcatcttcgaattctgtggaattgtgcagagtttttagttgtaactcacatgtctcgtttctcatactcatgaattcgacaattttcagTGCGATGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAACCCTTCATGATCTCTATGATCTCCAGGGTCAGTCCCCGTGGTACGACAAC
species | Oryza sativa |
transcript | LOC_Os01g70170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCTTCTCCGTCTCCATCGCCGCCGGCCGCGCCAGGAGCCCCATCAT TGCGATGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAACEST: gi|58590038|gb|CF988346.1|CF988346
genomic: GCCGCTTCTCCGTCTCCATCGCCGCCGGCCGCGCCAGGAGCCCCATCATgtgagtcacc ... caattttcagTGCGATGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAAC
EST: CGCCGCTTCTCCGTCTCCATCGCCGCCGGCCGCGCCAGGAGCCCCATCAT TGCGATGGCTTCGGGCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAACEST: gi|58586927|gb|CF985235.1|CF985235
genomic: CGCCGCTTCTCCGTCTCCATCGCCGCCGGCCGCGCCAGGAGCCCCATCATgtgagtcacc ... caattttcagTGCGATGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAAC
EST: CGCCGGTTCTCCGTCTCCATCGCCGCCGGCCGCGCCAGGAGCCCCATCAT GGCGAGGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAACEST: gi|58595087|gb|CF993395.1|CF993395
genomic: CGCCGCTTCTCCGTCTCCATCGCCGCCGGCCGCGCCAGGAGCCCCATCATgtgagtcacc ... caattttcagTGCGATGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAAC
EST: CGCCGCTTCTCCGTCTCCATCG-CG-CGGCCGCGCCAGGAGCCCCATCAT TGCGATGGGTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAACEST: gi|58586227|gb|CF984535.1|CF984535
genomic: CGCCGCTTCTCCGTCTCCATCGCCGCCGGCCGCGCCAGGAGCCCCATCATgtgagtcacc ... caattttcagTGCGATGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAAC
EST: CGCCGCTTCTCCGTCTCCATCGCCGCCGGCCGCGCCAGGAGCCCCATCAT TGCGATGGCGTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAAC
genomic: CGCCGCTTCTCCGTCTCCATCGCCGCCGGCCGCGCCAGGAGCCCCATCATgtgagtcacc ... caattttcagTGCGATGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAAC
ttagttgtaactcacatgtctcgtttctcatactcatgaattcgacaattttcagTGCGATGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAACCCTTCATGATCTCTATGATCTCCAGGGTCAGTCCCCGTGGTACGACAAC
aactcac putative branch site (score: 332)
ttttc putative PPT
acaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttgcgtgtgcatcttcgaattctgtggaattgtgcagagtttttagttgtaactcacatgtctcgtttctcatactcatgaattcgacaattttcagTGCGATGGCTTCTGCCAAGGAAGGAAATGGTGCCCCAACGAAGAGGACAACCCTTCATGATCTCTATGATCTCCAGGGTCAGTCCCCGTGGTACGACAAC
tacttgc
- - - - -gtgcatc
- - - - - - - - - - - - - - - -attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaat