1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCAGGAGTATGGCAAGGACAATCCAATCTGCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTgtgagtatagcactgtacaaaatctgacaatggcctactcatgctattaagttcttttgcttcagtcttctttttgaggaaccatccccctgtaaaatttgcag
species | Oryza sativa |
transcript | LOC_Os01g67490.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCT GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGGEST: gi|88992413|gb|CI035551.1|CI035551
genomic: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTgtgagtatag ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
EST: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCT GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGGEST: gi|89168675|gb|CI038527.1|CI038527
genomic: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTgtgagtatag ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
EST: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCT GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGGEST: gi|86833096|gb|CI333695.1|CI333695
genomic: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTgtgagtatag ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
EST: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCT GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGGEST: gi|88991813|gb|CI034951.1|CI034951
genomic: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTgtgagtatag ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
EST: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCT GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGGEST: gi|88987206|gb|CI034219.1|CI034219
genomic: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTgtgagtatag ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
EST: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCT GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
genomic: GGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTgtgagtatag ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGGAGTATGGCAAGGACAATCCAATCTGCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTgtgagtatagcactgtacaaaatctgacaatggcctactcatgctattaagttcttttgcttcagtcttctttttgaggaaccatccccctgtaaaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC