1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgattgttcaatgttcatcacttgatggctatgcaattcagtgaacttgtgtgatccactgaagaacttttttttgtctgttccagGTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG
species | Oryza sativa |
transcript | LOC_Os01g67490.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCAAGCGATAGCATCCAGAAGGAGCTTGCCGATGAGCTTCGATCGAAA GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATGEST: gi|88992413|gb|CI035551.1|CI035551
genomic: CGCCAAGCGATAGCATCCAGAAGGAGCTTGCCGATGAGCTTCGATCGAAAgtgattgttc ... tctgttccagGTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG
EST: ATAGCATCCAGAAGGAGCTTGCCGATGAGCTTCGATCGAAA GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATGEST: gi|89168675|gb|CI038527.1|CI038527
genomic: ATAGCATCCAGAAGGAGCTTGCCGATGAGCTTCGATCGAAAgtgattgttc ... tctgttccagGTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG
EST: ATGAGCTTCGATCGAAA GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATGEST: gi|66923799|gb|CX110647.1|CX110647
genomic: ATGAGCTTCGATCGAAAgtgattgttc ... tctgttccagGTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG
EST: TGAGCTTCGATCGAAA GTAGCAGATGAGTTTGTCAGGATATGAGGGGACACTGAATGEST: gi|88987206|gb|CI034219.1|CI034219
genomic: TGAGCTTCGATCGAAAgtgattgttc ... tctgttccagGTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG
EST: CGCCAAGCGATAGCATCCAGAAGGAGCTTGCCGATGAGCTTCGATCGAAA GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG
genomic: CGCCAAGCGATAGCATCCAGAAGGAGCTTGCCGATGAGCTTCGATCGAAAgtgattgttc ... tctgttccagGTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG
tgcaattcagtgaacttgtgtgatccactgaagaacttttttttgtctgttccagGTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG
cttttttttgtctgtt CT-rich tract
aagaactttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattgttcaatgttcatcacttgatggctatgcaattcagtgaacttgtgtgatccactgaagaacttttttttgtctgttccagGTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG