1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttaactcatagtctaatgatgtttcaaccataaattttaaaaaagcctcagtcagataatgtatttttttttctggttaatcttcattatgatggatagGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG
species | Oryza sativa |
transcript | LOC_Os01g67490.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG GTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCAEST: gi|88992413|gb|CI035551.1|CI035551
genomic: GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATGgtttcttttc ... tgatggatagGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCA
EST: GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG GTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCAEST: gi|89168675|gb|CI038527.1|CI038527
genomic: GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATGgtttcttttc ... tgatggatagGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCA
EST: GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG GTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCAEST: gi|66923799|gb|CX110647.1|CX110647
genomic: GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATGgtttcttttc ... tgatggatagGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCA
EST: GTAGCAGATGAGTTTGTCAGGATATGAGGGGACACTGAATG GTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCAEST: gi|88987206|gb|CI034219.1|CI034219
genomic: GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATGgtttcttttc ... tgatggatagGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCA
EST: GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATG GTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCA
genomic: GTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTGAATGgtttcttttc ... tgatggatagGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCA
gcctcagtcagataatgtatttttttttctggttaatcttcattatgatggatagGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG
ggttaat putative branch site (score: 18)
tcagataatgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaactcatagtctaatgatgtttcaaccataaattttaaaaaagcctcagtcagataatgtatttttttttctggttaatcttcattatgatggatagGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - tgtttca
- - - - - - - - - - - - - -accataa
- - - - - - - - - - - - - - - - - - - taaaaaa