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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacacaatcaaggctgtgagtatagcactgtacaaaatctgacaatggcctactcatgctattaagttcttttgcttcagtcttctttttgaggaaccatccccctgtaaaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGGACAGTATCAAGATCCTCTGCTACATGATTTCACAAACTGTATAGTGGTA

Basic information

species Oryza sativa
transcript LOC_Os01g67490.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86415594|gb|CI029605.1|CI029605
EST:     GCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTT                         GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
genomic: GCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTTgtaagaacac ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
EST: gi|86541075|gb|CI181281.1|CI181281
EST:     GCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTT                         GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
genomic: GCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTTgtaagaacac ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
EST: gi|25804246|gb|CA760207.1|CA760207
EST:     GCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTT                         GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
genomic: GCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTTgtaagaacac ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
EST: gi|87030871|gb|CI362085.1|CI362085
EST:     GCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTT                         GAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG
genomic: GCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGCCATCTCTTgtaagaacac ... aaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcttttgcttcagtcttctttttgaggaaccatccccctgtaaaatttgcagGAGAGGAATACAGATAACCGAAGATTACGCTACCTAAGATTGTTCTCAAGGACAGTATCAAGATCCTCTGCTACATGATTTCACAAACTGTATAGTGGTA
                                         tgtaaaattt  TA-rich tract