1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacctttcttgtgttatccatatcttcctctgcataattgcaattgttattgagtgatgccatattgcag
species | Oryza sativa |
transcript | LOC_Os01g67490.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGATEST: gi|66923799|gb|CX110647.1|CX110647
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
EST: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAA GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGATEST: gi|86541075|gb|CI181281.1|CI181281
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
EST: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGATEST: gi|25804246|gb|CA760207.1|CA760207
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
EST: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGATEST: gi|87030871|gb|CI362085.1|CI362085
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
EST: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacctttcttgtgttatccatatcttcctctgcataattgcaattgttattgagtgatgccatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA