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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtacctttcttgtgttatccatatcttcctctgcataattgcaattgttattgagtgatgccatattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGATCATCGCCGAATACGGTCAGGAGTATGGCAAGGACAATCCAATCTGCGTG

Basic information

species Oryza sativa
transcript LOC_Os01g67490.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86415594|gb|CI029605.1|CI029605
EST:     CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG                         GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
EST: gi|66923799|gb|CX110647.1|CX110647
EST:     CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAA                         GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
EST: gi|86541075|gb|CI181281.1|CI181281
EST:     CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG                         GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
EST: gi|25804246|gb|CA760207.1|CA760207
EST:     CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG                         GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
EST: gi|87030871|gb|CI362085.1|CI362085
EST:     CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAG                         GATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT
genomic: CATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGgtaggtacct ... catattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccatatcttcctctgcataattgcaattgttattgagtgatgccatattgcagGATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGATCATCGCCGAATACGGTCAGGAGTATGGCAAGGACAATCCAATCTGCGTG
                          aattgttatt  TA-rich tract