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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGgtcagtgacattcatactctggtttctgaacatgatacattgttctgatgagcaatctctgtaaggagactagtcattctaatgagaattaactctttgtggtatactcag

Basic information

species Oryza sativa
transcript LOC_Os01g66860.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86835168|gb|CI346643.1|CI346643
EST:     TATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAG                         ATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGC
genomic: TATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGgtcagtgaca ... gtatactcagATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGC
EST: gi|89165563|gb|CI102653.1|CI102653
EST:     TTCATCCTCTATGAG                         ATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGC
genomic: TTCATCCTCTATGAGgtcagtgaca ... gtatactcagATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGC
EST: gi|58588097|gb|CF986405.1|CF986405
EST:     TATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAG                         ATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGC
genomic: TATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGgtcagtgaca ... gtatactcagATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGC