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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctaccttctgagatgtggaattaaacacacttgatataatctgtaatctttttgttccacaaaacaatgatgtttaatgccaaattttgcatcagtactagttagatgctgacttgaatgccttctattgagacaacaatgcttctttgaatgttcagGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGACCTAAAGCCAAA

Basic information

species Oryza sativa
transcript LOC_Os01g66860.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86835168|gb|CI346643.1|CI346643
EST:     GGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGCCTTGAGATCGCCAG                         GGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGA
genomic: GGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGCCTTGAGATCGCCAGgtaaatctac ... gaatgttcagGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgctgacttgaatgccttctattgagacaacaatgcttctttgaatgttcagGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGACCTAAAGCCAAA
   tgctgac  putative branch site (score: 2)
                                      cttctttg  putative PPT
                   ttctatt  TA-rich tract