1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGgtccgtatctcggcgatttaagaatatcagatctaagcatttcagaaccaaaaagagagtccatgtcgcaatgtgaaaacataattggagatggtatgtcatcatattgtttcatgggattaattagcgactgaaacatttcttctgcattgcatttgcacttcttttttctacag
species | Oryza sativa |
transcript | LOC_Os01g66860.3 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTG GAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATCEST: gi|89165563|gb|CI102653.1|CI102653
genomic: TACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGgtccgtatct ... ttttctacagGAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATC
EST: TACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTG GAAATGACACGTGTGGGCCAAGCTGCATGAACGCCTTCTTGTGTACATATCEST: gi|89165652|gb|CI102742.1|CI102742
genomic: TACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGgtccgtatct ... ttttctacagGAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATC
EST: TACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTG GAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATCEST: gi|88260002|gb|CI363212.1|CI363212
genomic: TACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGgtccgtatct ... ttttctacagGAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATC
EST: TACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTG GAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATC
genomic: TACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGgtccgtatct ... ttttctacagGAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGgtccgtatctcggcgatttaagaatatcagatctaagcatttcagaaccaaaaagagagtccatgtcgcaatgtgaaaacataattggagatggtatgtcatcatattgtttcatgggattaattagcgactgaaacatttcttctgcattgcatttgcacttcttttttctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG