1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACTTATCGAAAGCCTTGAATCCAAGCTATCACCAAGGCAAAAAGAAGCTCTGTATTCTGCATATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAGgttttctcggaacagttgatccatctcccactttctttttgtagatatatcgtctgttagctagtattattgaggaatgtactgattgttgtgttgtatc...
species | Oryza sativa |
transcript | LOC_Os01g66560.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTATTCTGCATATGTTCTTTTACNCCTCCACGCGAACAAAATTGATCAG GCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTCEST: gi|58658136|gb|CK046816.1|CK046816
genomic: TGTATTCTGCATATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAGgttttctcgg ... tatattgcagGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTC
EST: TGTATTCTGCACATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAG GCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTCEST: gi|396941623|gb|HO188280.1|HO188280
genomic: TGTATTCTGCATATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAGgttttctcgg ... tatattgcagGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTC
EST: TGTATTCTGCACATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAG GCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTC
genomic: TGTATTCTGCATATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAGgttttctcgg ... tatattgcagGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTATCGAAAGCCTTGAATCCAAGCTATCACCAAGGCAAAAAGAAGCTCTGTATTCTGCATATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAGgttttctcggaacagttgatccatctcccactttctttttgtagatatatcgtctgttagctagtattattgaggaatgtactgattgttgtgttgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccac