1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcagaatagaattctttattggttattactattttcttatcatgttctactgctttactgcttgtttcatttgagagtaatgttgtcttttatattgcagGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTCCCTGTTTTGCTTCAAGCTGCAGTTCATGTGAGAGAAAAGAAGGTGCAGA
species | Oryza sativa |
transcript | LOC_Os01g66560.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTATTCTGCATATGTTCTTTTACNCCTCCACGCGAACAAAATTGATCAG GCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTCEST: gi|58658136|gb|CK046816.1|CK046816
genomic: TGTATTCTGCATATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAGgttttctcgg ... tatattgcagGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTC
EST: TGTATTCTGCACATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAG GCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTCEST: gi|396941623|gb|HO188280.1|HO188280
genomic: TGTATTCTGCATATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAGgttttctcgg ... tatattgcagGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTC
EST: TGTATTCTGCACATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAG GCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTC
genomic: TGTATTCTGCATATGTTCTTTTACTCCTCCACGCGAACAAAATTGATCAGgttttctcgg ... tatattgcagGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTC
tctactgctttactgcttgtttcatttgagagtaatgttgtcttttatattgcagGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTCCCTGTTTTGCTTCAAGCTGCAGTTCATGTGAGAGAAAAGAAGGTGCAGA
ttgtctttt CT-rich tract
ttgtcttttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagaatagaattctttattggttattactattttcttatcatgttctactgctttactgcttgtttcatttgagagtaatgttgtcttttatattgcagGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACATTCCCTGTTTTGCTTCAAGCTGCAGTTCATGTGAGAGAAAAGAAGGTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- -gaatagaa
- - - - - - - - - - - - - - - - - - - atcatgt
- - - - - - - - - - - - - - - - - - - - - - - ctactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt