1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGATACTCGAAGCTTTGAGCTTGCATATAATTCTGCCTGCTCGTTGATAGAAAATAAAAAGTATTCAGAAGCTAAAGAGCAGCTGGACTTGGCAAAAAGgtgattcctcgctgaggaactgatatcttaaatgaataaattctttcagttgcttgaactgattccatttaatcctacttcccttctaatcttaagagca...
species | Oryza sativa |
transcript | LOC_Os01g66560.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAAATAAAAAGTATTCAGAAGCTAAAGAGCAGCTGGACTTGGCAAAAAG AATTGGGAAAGAAGAGCTTATGGTGGACGAATATGGAGATGATGATCTTGAEST: gi|30229238|gb|CB967129.1|CB967129
genomic: GAAAATAAAAAGTATTCAGAAGCTAAAGAGCAGCTGGACTTGGCAAAAAGgtgattcctc ... tgttcttcagAATTGGGAAAGAAGAGCTTATGGTGGACGAATATGGAGATGATGATATTGA
EST: GAAAATAAAAAGTATTCAGAAGCTAAAGAGCAGCTGGACTTGGCACAAAG AATTGGGAAAGAAGAGCTTATGGTGGAC
genomic: GAAAATAAAAAGTATTCAGAAGCTAAAGAGCAGCTGGACTTGGCAAAAAGgtgattcctc ... tgttcttcagAATTGGGAAAGAAGAGCTTATGGTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATACTCGAAGCTTTGAGCTTGCATATAATTCTGCCTGCTCGTTGATAGAAAATAAAAAGTATTCAGAAGCTAAAGAGCAGCTGGACTTGGCAAAAAGgtgattcctcgctgaggaactgatatcttaaatgaataaattctttcagttgcttgaactgattccatttaatcctacttcccttctaatcttaagagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA