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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACCACTGGGAAAGGCACGTGAGAACTgtatgtatgacctagtttggattattgaatatattactatttctcatgtgttttgttagccacgggaggtttccttttatattttggtctcattattgttatcttgatcaaccgaag

Basic information

species Oryza sativa
transcript LOC_Os01g66030.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9865469|gb|AU101219.1|AU101219
EST:     ATGGACCACTGGGAAAGGCACGTGAGAACT                         GATAAGATGCTGGAAGACGAGAACAAGCTGCTGGCTTTTAAACTGCACCAG
genomic: ATGGACCACTGGGAAAGGCACGTGAGAACTgtatgtatga ... tcaaccgaagGATAAGATGCTGGAAGACGAGAACAAGCTGCTGGCTTTTAAACTGCACCAG
EST: gi|9865470|gb|AU101220.1|AU101220
EST:     ATGGACCACTGGGAAAGGCCACGTGAGAACT                         GATAAGATGCTGGAAGACGAGAACAAGCTGCTGGCTTTTAAACTG
genomic: ATGGACCACTGGGAAAGG-CACGTGAGAACTgtatgtatga ... tcaaccgaagGATAAGATGCTGGAAGACGAGAACAAGCTGCTGGCTTTTAAACTG
EST: gi|66925568|gb|CX112416.1|CX112416
EST:     ATGGACCACTGGGAAAGGCACGTGAGAACT                         GATAAGATGCTGGAAGACGAGAACAAGCTGCTG
genomic: ATGGACCACTGGGAAAGGCACGTGAGAACTgtatgtatga ... tcaaccgaagGATAAGATGCTGGAAGACGAGAACAAGCTGCTG