1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCACTTGAAAGGTGAAGATCTAAACTCTCTGCAGCCCAAAGAGCTCATCATGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTGgtaaatatgtcttttgcatttgccttctcaattcttttaacctttcagcagttgaccatataggtattagcactcatgaaatttctttgctactgatgttgctttgtttgttggtatag
species | Oryza sativa |
transcript | LOC_Os01g66030.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTG ATGGACCACTGGGAAAGGCACGTGAGAACTEST: gi|9865470|gb|AU101220.1|AU101220
genomic: TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTGgtaaatatgt ... gttggtatagATGGACCACTGGGAAAGGCACGTGAGAACT
EST: TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTG ATGGACCACTGGGAAAGGCCACGTGAGAACTEST: gi|66925568|gb|CX112416.1|CX112416
genomic: TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTGgtaaatatgt ... gttggtatagATGGACCACTGGGAAAGG-CACGTGAGAACT
EST: TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTG ATGGACCACTGGGAAAGGCACGTGAGAACT
genomic: TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTGgtaaatatgt ... gttggtatagATGGACCACTGGGAAAGGCACGTGAGAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACTTGAAAGGTGAAGATCTAAACTCTCTGCAGCCCAAAGAGCTCATCATGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTGgtaaatatgtcttttgcatttgccttctcaattcttttaacctttcagcagttgaccatataggtattagcactcatgaaatttctttgctactgatgttgctttgtttgttggtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG