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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatgtcttttgcatttgccttctcaattcttttaacctttcagcagttgaccatataggtattagcactcatgaaatttctttgctactgatgttgctttgtttgttggtatagATGGACCACTGGGAAAGGCACGTGAGAACT

Basic information

species Oryza sativa
transcript LOC_Os01g66030.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9865469|gb|AU101219.1|AU101219
EST:     TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTG                         ATGGACCACTGGGAAAGGCACGTGAGAACT
genomic: TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTGgtaaatatgt ... gttggtatagATGGACCACTGGGAAAGGCACGTGAGAACT
EST: gi|9865470|gb|AU101220.1|AU101220
EST:     TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTG                         ATGGACCACTGGGAAAGGCCACGTGAGAACT
genomic: TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTGgtaaatatgt ... gttggtatagATGGACCACTGGGAAAGG-CACGTGAGAACT
EST: gi|66925568|gb|CX112416.1|CX112416
EST:     TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTG                         ATGGACCACTGGGAAAGGCACGTGAGAACT
genomic: TGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAAACTGgtaaatatgt ... gttggtatagATGGACCACTGGGAAAGGCACGTGAGAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattagcactcatgaaatttctttgctactgatgttgctttgtttgttggtatagATGGACCACTGGGAAAGGCACGTGAGAACT
                          tactgat  putative branch site (score: 2)
              aaatttcttt  TA-rich tract