1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgaatacagatttcattcgcatttttcagtgaagtttactgacacagtaaaactattactaaccgcaatttatcgattgcgctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGTCATATGCTGCAGCACTATCTACGCTTCAAACTGCTATGGAGAAAATCA
species | Oryza sativa |
transcript | LOC_Os01g65090.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|29686132|gb|CB682407.1|CB682407
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88244955|gb|CI244804.1|CI244804
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|89182862|gb|CI045620.1|CI045620
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88247987|gb|CI247836.1|CI247836
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATATGGGGACGACAAATGCATCCGCATGEST: gi|86255317|gb|CI063806.1|CI063806
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88962574|gb|CI097726.1|CI097726
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|29644554|gb|CB649561.1|CB649561
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88993448|gb|CI110269.1|CI110269
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|86497677|gb|CI140310.1|CI140310
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|86873215|gb|CI328595.1|CI328595
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|29644410|gb|CB649417.1|CB649417
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|86522863|gb|CI163069.1|CI163069
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|89170826|gb|CI040103.1|CI040103
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAGATGCATCCGCATGEST: gi|396941455|gb|HO188664.1|HO188664
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88218668|gb|CI218517.1|CI218517
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|86485742|gb|CI128375.1|CI128375
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|29683532|gb|CB679807.1|CB679807
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|87016653|gb|CI275655.1|CI275655
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88217957|gb|CI217806.1|CI217806
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|86486199|gb|CI128832.1|CI128832
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88955871|gb|CI092159.1|CI092159
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88968509|gb|CI098751.1|CI098751
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88245571|gb|CI245420.1|CI245420
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88513450|gb|CI440956.1|CI440956
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88248836|gb|CI247920.1|CI247920
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88243308|gb|CI244430.1|CI244430
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88849759|gb|CI089865.1|CI089865
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88973004|gb|CI019623.1|CI019623
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88248331|gb|CI248180.1|CI248180
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88246765|gb|CI246614.1|CI246614
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|29679352|gb|CB675627.1|CB675627
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|89166827|gb|CI104113.1|CI104113
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|86482986|gb|CI125619.1|CI125619
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGEST: gi|88228601|gb|CI228081.1|CI228081
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
EST: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAG GTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
genomic: CTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGgtatgaatac ... gctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATG
ttactgacacagtaaaactattactaaccgcaatttatcgattgcgctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGTCATATGCTGCAGCACTATCTACGCTTCAAACTGCTATGGAGAAAATCA
tactaac putative branch site (score: 0)
taaaactattactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatacagatttcattcgcatttttcagtgaagtttactgacacagtaaaactattactaaccgcaatttatcgattgcgctattatagGTTGCACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGTCATATGCTGCAGCACTATCTACGCTTCAAACTGCTATGGAGAAAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA