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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatcggcgtcgcgttggggggttggatctttgctggttctttggcggcgatcggtgacgtgatgacgtgggggggaatggattggcttgttgttgcagggcgtcggggaggtgcaggatggcgtcggtggtggtgagGGCGGAGGCGGTGGACGCGACCATCAGCCCGACGGTGAGCGCGCTGCGGCCGTCCAAGACCATGGCCATCACCGACCAGGCCACGGCGCTGCGGCAGGCT

Basic information

species Oryza sativa
transcript LOC_Os01g65090.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65090.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G400604_T01 (Zea mays), 3'ss of exon 1
gtgagca------tcggcgtcgcgttggggggttggatctttgctggttctttggcggcgatcggtgacgtgatgacgtgggggggaatggattggcttgttgttgcagggcgtcggggaggtgca-ggatggcgtcggtggtggtgagGGCGGAGG--CGGTGGACGCGACCATCAGCCCGACGGTGAGCGCGCTGCGGCCGTCCAAGACCATGGCCATCACCGACCAGGCCACGGCGCTGCGGCAGGCT
|||||||      || ||   | ||      | |  |  || | | ||| |||| || ||||||||    || |  |||     |||   || ||  |     |  | |||    |      | || |||||||  ||   |  | | |  |||  |  |     ||||| | |  | |  || || ||  | || |  |  | |   |  || | |||||| |     ||  |  |||||||||      
gtgagcagccatctcagcaaagtgtccatcagatacacgttcgttcgttttttgccg-cgatcggttggttgcttccgtttcttggatctgaatgagtgaacttaccggggaactgttcgcttccatggatggctgcgtccgcagAGCGTCCGGGAGGACAAAACACGCGGCGAGGACCAGGATGGCGATTGTGCGGGAGGAGGCAGTGGACACGTCCATCAGCCCAAGGGTGAGCGCGCTGCGG------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29645872|gb|CB650879.1|CB650879
EST:     AAGTCCCAACTCCGTCTGCTTCGCCAG                         GGCGGAGGCGGTGGACGCGACCATCAGCCCGACGGTGAGCGCGCTGCGGCC
genomic: AAGTCCCAACTCCGTCTGCTTCGCCAGgtgagcatcg ... tggtggtgagGGCGGAGGCGGTGGACGCGACCATCAGCCCGACGGTGAGCGCGCTGCGGCC