Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaattgataagatccagtagttctgctaaatcctagttgcataccccagacagatggctaaacatccaaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTAGAGGGTTTTGGCACTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCT

Basic information

species Oryza sativa
transcript LOC_Os01g65090.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65090.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G400604_T01 (Zea mays), 3'ss of exon 8
gtgagaattgataagatccagtagttctgctaaatcctagttgcataccccagacagatggctaaac----------atccaaa------------tttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTAGAGGGTTTTGGCACTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCT
|| | |   ||||  |  |  | ||||| || || ||||||| || ||       | |||||||||           |||||||            |||| |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||||| | || |||||||| ||||| ||||| |
gtaaaagaagatatta--cgatggttcttctgaaacctagttccacacttgtataaaatggctaaatgataaagaaaatccaaacctaattatcaatttgcagGGTGCCTTTTATTTGTTCATTGACTTCAGCGCCTACTATGGGTCTGAAGTAGAGGGGTTTGGCACTATCAAGAATTCCGAGTCCCTTTGCATCTTCCTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29686132|gb|CB682407.1|CB682407
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88244955|gb|CI244804.1|CI244804
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|89182862|gb|CI045620.1|CI045620
EST:     GTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: GTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88247987|gb|CI247836.1|CI247836
EST:     ATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCANGCTCCTACTATGGATCTGAAGT
genomic: ATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCA-GCTCCTACTATGGATCTGAAGT
EST: gi|86255317|gb|CI063806.1|CI063806
EST:     TAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|29644554|gb|CB649561.1|CB649561
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88993448|gb|CI110269.1|CI110269
EST:     TCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|86497677|gb|CI140310.1|CI140310
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|29644410|gb|CB649417.1|CB649417
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|86522863|gb|CI163069.1|CI163069
EST:     -TGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|396941455|gb|HO188664.1|HO188664
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88218668|gb|CI218517.1|CI218517
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|29683532|gb|CB679807.1|CB679807
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|87016653|gb|CI275655.1|CI275655
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88955871|gb|CI092159.1|CI092159
EST:     GGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCTTACTATGGATCTGAAGTA
genomic: GGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88968509|gb|CI098751.1|CI098751
EST:     GGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: GGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88248836|gb|CI247920.1|CI247920
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88243308|gb|CI244430.1|CI244430
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88973004|gb|CI019623.1|CI019623
EST:     GAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: GAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88248331|gb|CI248180.1|CI248180
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88246765|gb|CI246614.1|CI246614
EST:     AAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: AAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|29679352|gb|CB675627.1|CB675627
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|89166827|gb|CI104113.1|CI104113
EST:     TGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|86482986|gb|CI125619.1|CI125619
EST:     TAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
EST: gi|88228601|gb|CI228081.1|CI228081
EST:     TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAG                         GGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA
genomic: TTGTAAAAAGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGgtgagaattg ... aaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctaaatcctagttgcataccccagacagatggctaaacatccaaatttgtagGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTATGGATCTGAAGTAGAGGGTTTTGGCACTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCT
                                             aaatttgta  TA-rich tract