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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaatttgagaagaatacgcagaattcctctttggttcttttatttaccttctcgagctttttttttttttttgaaaactcgagcatcttctttggttcgtcaatgactccccttttttggccagGTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTGATTTGTGTAGAATATTTATTCTCAGGTCGGGAATACCTGTTGTGCATCA

Basic information

species Oryza sativa
transcript LOC_Os01g64900.1
intron # 31
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86480040|gb|CI122673.1|CI122673
EST:     GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAAC                         GTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
genomic: GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAACgtaagtcaat ... ttttggccagGTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
EST: gi|88490440|gb|CI427712.1|CI427712
EST:     GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAAC                         GTTCGGTGTACTAGATCAAGGGAAGGTGCAACTGTAAGTCTAAACATAGCT
genomic: GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAACgtaagtcaat ... ttttggccagGTTCGGTGTACTAGATCAAGG-AAGGTGCAACTGTAAGTCTAAACATAGCT
EST: gi|88485866|gb|CI423137.1|CI423137
EST:     GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAAC                         GTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
genomic: GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAACgtaagtcaat ... ttttggccagGTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
EST: gi|88477928|gb|CI415199.1|CI415199
EST:     GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAAC                         GTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
genomic: GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAACgtaagtcaat ... ttttggccagGTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
EST: gi|88844808|gb|CI021383.1|CI021383
EST:     GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAAC                         GTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
genomic: GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAACgtaagtcaat ... ttttggccagGTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
EST: gi|88487985|gb|CI425256.1|CI425256
EST:     GTAATGCACAGACCAGCTCTGGATTAACTTCTTTTAACCCGGTAGATAAC                         GTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
genomic: GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAACgtaagtcaat ... ttttggccagGTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
EST: gi|88473882|gb|CI411153.1|CI411153
EST:     GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAAC                         GTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG
genomic: GTAATGCACAGACCAGCTCTGGATTAACTGCTTTTAACCCGGTAGATAACgtaagtcaat ... ttttggccagGTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaaaactcgagcatcttctttggttcgtcaatgactccccttttttggccagGTTCGGTGTACTAGATCAAGGAAGGTGCAACTGTAAGTCTAAACATAGCTGATTTGTGTAGAATATTTATTCTCAGGTCGGGAATACCTGTTGTGCATCA
                                     ctccccttttttggcc  CT-rich tract
                                           tttttt  TA-rich tract