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TGATCCTGATGAAGATGGTGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGgtaaatgagttactctatatacaatgtctaagcaaacagtacttagagtggcattatccaatttggttttctaggaatgcctgcatgttttgaagtgata...
species | Oryza sativa |
transcript | LOC_Os01g64900.1 |
intron # | 30 |
splice site | 5' |
intron type | U2 |
EST: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAG GAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATGEST: gi|88490440|gb|CI427712.1|CI427712
genomic: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGgtaaatgagt ... atttctttagGAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATG
EST: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAG GAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATGEST: gi|88485866|gb|CI423137.1|CI423137
genomic: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGgtaaatgagt ... atttctttagGAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATG
EST: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACA- GAGGTCGCTGGCCTCAAGGAAAACAGCAAGAGAGCGTTGGATTCGAGTAATEST: gi|88477928|gb|CI415199.1|CI415199
genomic: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGgtaaatgagt ... atttctttagGA-GTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAAT
EST: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAG GAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATGEST: gi|88844808|gb|CI021383.1|CI021383
genomic: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGgtaaatgagt ... atttctttagGAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATG
EST: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAG GAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATGEST: gi|88487985|gb|CI425256.1|CI425256
genomic: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGgtaaatgagt ... atttctttagGAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATG
EST: TGATATTGACGACAATTTTGTGAANCAGCCTTTTTCAAATAACAGAACAG GAGTCGCTGGCCTCAAGAAAAACACCAAGAGANCGTTGGATTCGAGTAATGEST: gi|88473882|gb|CI411153.1|CI411153
genomic: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGgtaaatgagt ... atttctttagGAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATG
EST: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAG GAGTCGCTGGCCTCAAGAAAAACANCAAGAGAGCGTTGGATTCGAGTAATG
genomic: TGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGgtaaatgagt ... atttctttagGAGTCGCTGGCCTCAAGAAAAACAGCAAGAGAGCGTTGGATTCGAGTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCCTGATGAAGATGGTGATATTGACGACAATTTTGTGAAGCAGCCTTTTTCAAATAACAGAACAGgtaaatgagttactctatatacaatgtctaagcaaacagtacttagagtggcattatccaatttggttttctaggaatgcctgcatgttttgaagtgata
- - - - - - - - - - - - - - - - - - - TGAAGC