1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgtgtgaatgatacgacggtatagcattgacatgtttctagaaactttcggtctggtttctgtttgagcaaccagagattcatcaggggcagcgatacaatatccccttgtagcatcattttcagaaagctgaatttctgatccagtactttgcttgatttttaaattgtttttgcagGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAGGCAAAGTAGTCGCTACTCTTACAGCAATGCAAA
species | Oryza sativa |
transcript | LOC_Os01g63010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAG GATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCEST: gi|33686131|gb|CF314370.1|CF314370
genomic: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGgtgtgtgaat ... gtttttgcagGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCC
EST: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAG GACTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCEST: gi|33686130|gb|CF314369.1|CF314369
genomic: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGgtgtgtgaat ... gtttttgcagGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCC
EST: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAG GACTCTGCTGGGNAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCEST: gi|86508183|gb|CI150816.1|CI150816
genomic: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGgtgtgtgaat ... gtttttgcagGATTCTGCTGGG-AAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCC
EST: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAG GATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCEST: gi|218482834|gb|FG961732.1|FG961732
genomic: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGgtgtgtgaat ... gtttttgcagGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCC
EST: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAG GATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCEST: gi|16573859|gb|BI801155.1|BI801155
genomic: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGgtgtgtgaat ... gtttttgcagGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCC
EST: AATCTCGAATCGCTCGTCATGGGCACCCGTGGCCTCGGCCAGATCCAGAG GATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGC-TCTTGCCCEST: gi|86601571|gb|CI253899.1|CI253899
genomic: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGgtgtgtgaat ... gtttttgcagGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCC
EST: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAG GATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCC
genomic: AATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGgtgtgtgaat ... gtttttgcagGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCC
agaaagctgaatttctgatccagtactttgcttgatttttaaattgtttttgcagGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAGGCAAAGTAGTCGCTACTCTTACAGCAATGCAAA
ttgttttt CT-rich tract
ttgatttttaaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgaatgatacgacggtatagcattgacatgtttctagaaactttcggtctggtttctgtttgagcaaccagagattcatcaggggcagcgatacaatatccccttgtagcatcattttcagaaagctgaatttctgatccagtactttgcttgatttttaaattgtttttgcagGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAGGCAAAGTAGTCGCTACTCTTACAGCAATGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG