1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggctggctctatatatgctggtgctgcatgcatggcagcatgctttgtcttgcctttcaggtcgagaggcctgatgttgtttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCAGCCGTG
species | Oryza sativa |
transcript | LOC_Os01g63010.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACATGCTCAACGCCGTGTCCCGGGAGAAGGAG CTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCEST: gi|33686131|gb|CF314370.1|CF314370
genomic: GACATGCTCAACGCCGTGTCCCGGGAGAAGGAGgtaggctggc ... tttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGC
EST: GGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAG CTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCEST: gi|33686130|gb|CF314369.1|CF314369
genomic: GGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGgtaggctggc ... tttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGC
EST: CGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAG CTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCEST: gi|88463402|gb|CI695864.1|CI695864
genomic: CGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGgtaggctggc ... tttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGC
EST: CGGACGAAGAGGTGTNCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAG CTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCEST: gi|218482834|gb|FG961732.1|FG961732
genomic: CGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGgtaggctggc ... tttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGC
EST: CGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAG CTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCEST: gi|16573859|gb|BI801155.1|BI801155
genomic: CGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGgtaggctggc ... tttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGC
EST: CGGACGAAGA-GTGTTCGACATGCTCAAC-CCGTGTCCCGGGAGAAGGAG CTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCEST: gi|86601571|gb|CI253899.1|CI253899
genomic: CGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGgtaggctggc ... tttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGC
EST: CGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAG CTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGC
genomic: CGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGgtaggctggc ... tttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGC
gcagcatgctttgtcttgcctttcaggtcgagaggcctgatgttgtttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCAGCCGTG
gcctgat putative branch site (score: 2)
tttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggctggctctatatatgctggtgctgcatgcatggcagcatgctttgtcttgcctttcaggtcgagaggcctgatgttgtttgtatcagCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCAGCCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA