1 5' 3' | 2 5' 3' | 3 5' 3' |
GACAACCTCCTCCGCAAGGGCGACACCCTCGTCCTCCTCCACATCCGGCACCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACgtacgtaatagtaatactaagagagaaacgcaccgagtttacctcttgcattctaaattttgaatgccttgatctcccatcgaaaattgtcatgtcatgtcgcgtcgtctctgtactgatcgcacgcag
species | Oryza sativa |
transcript | LOC_Os01g63010.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCAC CGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGEST: gi|88463402|gb|CI695864.1|CI695864
genomic: CCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACgtacgtaata ... tcgcacgcagCGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATG
EST: CCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCAC CGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGEST: gi|33685836|gb|CF314075.1|CF314075
genomic: CCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACgtacgtaata ... tcgcacgcagCGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATG
EST: CCACGGCCGCGACGAGGCCAAGAACGTCCTCTAGTCTCACACCGGATCAC CGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGEST: gi|86601571|gb|CI253899.1|CI253899
genomic: CCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACgtacgtaata ... tcgcacgcagCGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATG
EST: CCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCAC CGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATG
genomic: CCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACgtacgtaata ... tcgcacgcagCGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAACCTCCTCCGCAAGGGCGACACCCTCGTCCTCCTCCACATCCGGCACCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACgtacgtaatagtaatactaagagagaaacgcaccgagtttacctcttgcattctaaattttgaatgccttgatctcccatcgaaaattgtcatgtcatgtcgcgtcgtctctgtactgatcgcacgcag
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