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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTACTGTGCACACTTCTTGTTATCAAGGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAGgtatatttcctaaatatacccatgattttcatctcacgatacacactctaaattacctgcctttcactctttctttcacaaaatataggtcgttttgcta...

Basic information

species Oryza sativa
transcript LOC_Os01g62440.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62440.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G082260_T01 (Zea mays), 5'ss of exon 5
AAGCTACTGTGCACACTTCTTGTTATCAAGGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAGgtatatttc-ctaaatatacccatgattttcatctcacgatacacactctaaattacct--gcctttcactctttctttcacaaaatatag-gtcgttttgcta
|||||||||||||||  ||||||| ||||||||  |||| |||||||||||||| || ||| | |||| |||  |||||||||||||  |||||||||||||||||||  ||| |||||    ||| |   |  ||| | || | | | || || |  |   |   | |   |     ||    | | | |   | |||     
AAGCTACTGTGCACATCTCTTGTTGTCAAGGGATGTAGTGTATTTTGTCAAGGTAGAGAGCAGAGATTATTCCATGTACCAACCTCGTTCACCTGCTCAGgtatatttttctagatatatgtgtgagt---aaatcatgtta-atattttagatgattttgacaaataagattgcacatcttttattgtggtaccatttcaggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33679223|gb|CF307462.1|CF307462
EST:     AGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAG                         GTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGGAG
genomic: AGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAGgtatatttcc ... ctggtagtagGTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGGAG
EST: gi|29670923|gb|CB667198.1|CB667198
EST:     AGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAG                         GTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGGAG
genomic: AGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAGgtatatttcc ... ctggtagtagGTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGGAG