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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactaaacatgcctttgttattttcagtctgtgagcacatttgattcagaatgggtcatttgtagagaagagaatgttaaacactctagcctgtgttgactagaaaatctattatgcaccagGAGAGCCAAATGACTTGTGCTCCTCCATCAGCAGGACTTAGCAAGTCATAAGCGGAAGTTGCCTCCTTGTCAATGTCACCATCCAGCATGTTCTCAAGTG

Basic information

species Oryza sativa
transcript LOC_Os01g62440.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88233473|gb|CI233322.1|CI233322
EST:     GAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAG                         GAGAGCCAAATGACTTGTGCTCCTCCATCAGCAGGACTTAGCAAGTCATAA
genomic: GAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGgtaagtacta ... tatgcaccagGAGAGCCAAATGACTTGTGCTCCTCCATCAGCAGGACTTAGCAAGTCATAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagagaatgttaaacactctagcctgtgttgactagaaaatctattatgcaccagGAGAGCCAAATGACTTGTGCTCCTCCATCAGCAGGACTTAGCAAGTCATAAGCGGAAGTTGCCTCCTTGTCAATGTCACCATCCAGCATGTTCTCAAGTG
                          tgttgac  putative branch site (score: 3)
                                 tagaaaatctattat  TA-rich tract