Sequence
atgc intronic sequence ATGC exonic sequencegtcagaagctcccttattccatctgattttctatcttgtatttccatattcagatgtaactctaatcttttgttttctcagATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTGTTATCAAGGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTT
Basic information
species | Oryza sativa |
transcript | LOC_Os01g62440.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g62440.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G082260_T01 (Zea mays), 3'ss of exon 4
gtcagaagctcccttattccatctgattttctatcttgtat-ttccatattcagatgtaactctaatcttttgttttctcagATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTGTTATCAAGGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTT
|||||| |||| | | | ||||| ||| ||| | | || || || | || | | | | | ||| |||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||| |||| |||||||||||||| || ||| | |||| ||
gtcagaggctcttcaaatttgtttgattccctaacttttttctttcacatactcatatgttttt----tgtgatttcctcagATAGTGTATGGTACCAAGGAGTCTTTGGAAAGCTACTGTGCACATCTCTTGTTGTCAAGGGATGTAGTGTATTTTGTCAAGGTAGAGAGCAGAGATTATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29670923|gb|CB667198.1|CB667198EST: TGGAGCTTTCTGAGAATGATAAATCAGTAACAGTAGAGGAGTTCGCAGAG ATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTG
genomic: TGGAGCTTTCTGAGAATGATAAATCAGTAACAGTAGAGGAGTTCGCAGAGgtcagaagct ... gttttctcagATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttctatcttgtatttccatattcagatgtaactctaatcttttgttttctcagATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTGTTATCAAGGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTT
ctctaat putative branch site (score: 3)
tcttttgttttctc CT-rich tract
taatcttttgtttt TA-rich tract