1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAATCTTGATCTTTACAGGTATGATGTTCGCATCAGGTACACTGAGGAAGTTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGgtagttttaattactaccaaatattgatgttcttcatattgtgtttttccctttatgtaagtttagctgtacaactataaattaatatgtcagctattag...
species | Oryza sativa |
transcript | LOC_Os01g62440.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCCTGACTCAAACAAG GATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGATEST: gi|33797555|gb|CF324637.1|CF324637
genomic: GTCCTGACTCAGACAAGgtagttttaa ... atctttccagGATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGAT
EST: TTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAG GATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGATEST: gi|58670594|gb|CK059280.1|CK059280
genomic: TTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGgtagttttaa ... atctttccagGATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGAT
EST: TTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAG GATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGATEST: gi|33794821|gb|CF323290.1|CF323290
genomic: TTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGgtagttttaa ... atctttccagGATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGAT
EST: TTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAG GATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGAT
genomic: TTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGgtagttttaa ... atctttccagGATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATCTTGATCTTTACAGGTATGATGTTCGCATCAGGTACACTGAGGAAGTTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGgtagttttaattactaccaaatattgatgttcttcatattgtgtttttccctttatgtaagtttagctgtacaactataaattaatatgtcagctattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA