1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGgtaagtactaaacatgcctttgttattttcagtctgtgagcacatttgattcagaatgggtcatttgtagagaagagaatgttaaacactctagcctgtg...
species | Oryza sativa |
transcript | LOC_Os01g62440.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAG GGTTCGATTGATACTGCTATGATAGAACCACGTATCAAGGTGGCAAATCCTEST: gi|157650381|gb|EX450015.1|EX450015
genomic: GAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGgtaagtacta ... aagttcacagGGTTCGATTGATACTGCTATGATAGAACCACGTATCAAGGTGGCAAATCCT
EST: GAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAG GGTTCGATTGATACTGCTATGATAGAACCACGTATCAAGGTGGCAAATCCTEST: gi|58695642|gb|CK084329.1|CK084329
genomic: GAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGgtaagtacta ... aagttcacagGGTTCGATTGATACTGCTATGATAGAACCACGTATCAAGGTGGCAAATCCT
EST: GAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAG GGTTCGATTGATACTGCTATGATAGAACCACGTATCAAGGTGGCAAATCCT
genomic: GAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGgtaagtacta ... aagttcacagGGTTCGATTGATACTGCTATGATAGAACCACGTATCAAGGTGGCAAATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGgtaagtactaaacatgcctttgttattttcagtctgtgagcacatttgattcagaatgggtcatttgtagagaagagaatgttaaacactctagcctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT