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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCAAAAACCTGTACCACATGGTGTCCTCGGTATTCCTGGTTATGTACAGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgcctctgttattcctgctaatagggagaactttaacagtttccaggaacatgatggttacaatttacaaagagctttcctattatcaatttc...

Basic information

species Oryza sativa
transcript LOC_Os01g62440.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62440.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G082260_T02 (Zea mays), 5'ss of exon 11
TTTCCAAAAACCTGTACCACATGGTGTCCTCGGTATTCCTGGTTATGTACAGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgcctctgttattcctgctaatagggagaactttaacagtttccaggaacatgatggtt---acaatttacaaaga--------gctttcc-----tattatcaatttc---------------------------------------------------------------------------------
||| ||||||||||||||||||||||| || |||||||||||||| || ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| | ||           |||| ||| || ||| | ||  |   |||| || |   ||    || ||||    ||        ||||||      | | ||||| |||                                                                                 
TTTTCAAAAACCTGTACCACATGGTGTACTTGGTATTCCTGGTTACGTGCAGTTCACCTCTCCTATCCGAAGATATGTTGACCTGCTAGCTCATTATCAGgtaaatatgcttatg-----------aataaggaaaagttttatagcatatgggaaaataagaatttgtgcattttattttgatgttgctagctttctgatagtgtcatcaaattcattatttaacctatgtacctttgatccaaagagtatatcaacaatcaacttaatttcaaatattatgggaactaattgtag

upper sequence: LOC_Os01g62440.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA18G25560.1 (Glycine max), 5'ss of exon 12
TTTCCAAAAACCTGTACCACATGGTGTCCTCGGTATTCCTGGTTATGTACAGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgcctctgttattcctgctaatagggagaactttaacagtttccaggaacatgatggttacaatttacaaagagctttcctattatcaatttc-------------
||||   || || | ||  ||||||||  | || ||||||||||| || ||||| || ||||| || || |||||| | ||||| || |||||||||||||||| |    |  | | | |  |  ||||  | ||   | ||| || || ||| |   ||||| || | ||      | |   ||  | |||  |  | |             
TTTCAGGAAGCCAGCACGCCATGGTGTTTTGGGGATTCCTGGTTACGTTCAGTTTACATCCCCCATCCGTAGATATTTGGATCTTCTTGCTCATTATCAGgtaagt----cattttcaatttta-taatttgcag--ttataatagattgcagaag-gtgatgcttgctat-----gaaactcttatttttaaaatctgcaagaatcagcaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88668990|gb|CI719947.1|CI719947
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|58691627|gb|CK080314.1|CK080314
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88666182|gb|CI716338.1|CI716338
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88973217|gb|CI717746.1|CI717746
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88905635|gb|CI712934.1|CI712934
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88973605|gb|CI718033.1|CI718033
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88668065|gb|CI722804.1|CI722804
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|84117186|gb|CD150953.1|CD150953
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88973910|gb|CI718318.1|CI718318
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88670969|gb|CI725085.1|CI725085
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88665660|gb|CI715816.1|CI715816
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88671436|gb|CI725552.1|CI725552
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88667770|gb|CI722509.1|CI722509
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88672844|gb|CI726960.1|CI726960
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88595326|gb|CI714147.1|CI714147
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88673071|gb|CI727186.1|CI727186
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88594904|gb|CI715060.1|CI715060
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88674757|gb|CI728870.1|CI728870
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88972691|gb|CI717417.1|CI717417
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88667581|gb|CI722318.1|CI722318
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88675010|gb|CI729123.1|CI729123
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88672883|gb|CI726999.1|CI726999
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88676179|gb|CI730292.1|CI730292
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88665483|gb|CI715639.1|CI715639
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|89172650|gb|CI721709.1|CI721709
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88670202|gb|CI723723.1|CI723723
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88908927|gb|CI716652.1|CI716652
EST:     AGTTCACCTCCCCTATTCGAAGATATGTGGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88676890|gb|CI731003.1|CI731003
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88904571|gb|CI711870.1|CI711870
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88667235|gb|CI715393.1|CI715393
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|15847582|gb|BI795872.1|BI795872
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88669369|gb|CI723287.1|CI723287
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88904942|gb|CI712241.1|CI712241
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88972452|gb|CI717192.1|CI717192
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|89172415|gb|CI721474.1|CI721474
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|89171756|gb|CI720815.1|CI720815
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88904358|gb|CI711666.1|CI711666
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
EST: gi|88671281|gb|CI724327.1|CI724327
EST:     AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAG                         ATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA
genomic: AGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgc ... taaattgcagATAAAGGCTTTTCTTAGAGGTGAATCTCCACCCTATTCAGCTGGTGACCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCCAAAAACCTGTACCACATGGTGTCCTCGGTATTCCTGGTTATGTACAGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgcctctgttattcctgctaatagggagaactttaacagtttccaggaacatgatggttacaatttacaaagagctttcctattatcaatttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA