1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgcatgactttaccaggtttcccagataatcaaatcaaatatagctattaaattcatctacctttacattttaccggcaatatttttcttgttacatttctgttctaatgctctctgtacgcatatgccatactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCGGCGCTGGCAGTGATGAACCTATTTTGGTTCTGGAAGATATTCAAGGGAA
species | Oryza sativa |
transcript | LOC_Os01g60120.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCGEST: gi|8859152|gb|AU096470.1|AU096470
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCGEST: gi|29669062|gb|CB665337.1|CB665337
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCGEST: gi|313084023|gb|HO213806.1|HO213806
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: TTCCATTTTGATCAG GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCGEST: gi|29664738|gb|CB661013.1|CB661013
genomic: TTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG GTGAAGTCCATTTTCCCCCTGGGCTTTTACAGTATACTGACGGTGCCACCGEST: gi|8527754|gb|AU092569.1|AU092569
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCGEST: gi|29669064|gb|CB665339.1|CB665339
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG GTGAAGTCCATCTTCCCCCTGGGCTTTTACAGTATACTGACGGTGCCACCG
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
tttcttgttacatttctgttctaatgctctctgtacgcatatgccatactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCGGCGCTGGCAGTGATGAACCTATTTTGGTTCTGGAAGATATTCAAGGGAA
ttctaat putative branch site (score: 2)
tactttc putative PPT
ttacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatgactttaccaggtttcccagataatcaaatcaaatatagctattaaattcatctacctttacattttaccggcaatatttttcttgttacatttctgttctaatgctctctgtacgcatatgccatactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCGGCGCTGGCAGTGATGAACCTATTTTGGTTCTGGAAGATATTCAAGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA