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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatattctccaacacaatttttgttatttatctgctgtcattattgttgcttgttttccattttgagtctaactacatgatgccacttgttgatagGGGTTTCTCTACATTCCATGCATTGGTTGCAGCTGTTGTTTCTTTTTACCTGGTTGTGATATCTGACCTCTTCCATAGCAACATAATAATTGATAGAAAC

Basic information

species Oryza sativa
transcript LOC_Os01g60120.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60120.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G021589_T02 (Zea mays), 3'ss of exon 3
-----------------------------gtaagat-attctccaacacaatttttgttatttatctgctgtcattattgttgct-----tgttttccattttg---agtctaactacatgatgccacttgttgatagGGGTTTCTCTACATTCCATGCATTGGTTGCAGCTGTTGTTTCTTTTTACCTGGTTGTGATATCTGACCTCTTCCATAGCAACATAATAATTGATAGAAAC
                              ||   | ||| | |   | | |||| | | |   | || | |  ||  |  | ||     ||  ||    ||||   | ||| | || || ||||||| | ||| |||||||||||||||| ||||||||||||| || ||||  |||||||| ||||||||  |||| |||||||||||| ||    |       | |   | ||  
gtgagatatgtgtcgacacaacattttagatacttttatttttcttaatatttttggctttagttttgttcttttttcttcttctggaaatggctttagctttgtttaatctgattatataatgccacgtattggtagGGGTTTCTCTACACTCCATGCATTGGTAGCTGCTGCCGTTTCTTTCTACCTGGTCATGATCTCTGACCTCTTCAATGAAGATGCGCACAATAGCATAATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgttgcttgttttccattttgagtctaactacatgatgccacttgttgatagGGGTTTCTCTACATTCCATGCATTGGTTGCAGCTGTTGTTTCTTTTTACCTGGTTGTGATATCTGACCTCTTCCATAGCAACATAATAATTGATAGAAAC
                         gtctaac  putative branch site (score: 2)
         ttgtttt  TA-rich tract