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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacccatgatgacttgatttaaataattaatcaaattttcagctctcctattgctcttttgaaacacgtgatttacaaacctttggttggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG

Basic information

species Oryza sativa
transcript LOC_Os01g60120.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86261222|gb|CI004787.1|CI004787
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|8859152|gb|AU096470.1|AU096470
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|29669062|gb|CB665337.1|CB665337
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|29664738|gb|CB661013.1|CB661013
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|8527754|gb|AU092569.1|AU092569
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|29669064|gb|CB665339.1|CB665339
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctcctattgctcttttgaaacacgtgatttacaaacctttggttggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG
                            atttacaaa  TA-rich tract