Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgtgcagttatccgagttttctgcagcaactggctggaattgctgccttatatcatgcccttgctgctatttttctgaatttcaacgttgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGA

Basic information

species Oryza sativa
transcript LOC_Os01g59990.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59990.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA03G34700.1 (Glycine max), 3'ss of exon 3
--catgtgcagttatccgagttttctgcagca-actggctggaattgctgccttatat-catgcccttgctgctatttttctgaatttcaacgttgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGA
      ||    | | |  ||  | || || | | ||  | | | | ||||  |   | |||||  |||     ||| ||     | |  | ||     |||||||||||  |   |||||||| ||||||||| | ||| |  |||| ||||| |||||  |||| ||||||||||| || |||||||||||||| || ||||
attggttgtttgtgtgcatgtcatgtgtaggacattgcttagtaatactgcaatggttgcatgcatttgaattgattgttt---gtgtgcatgtcatg-tgtagGACATTGCTCAAGAAGCTGTGAAGAAGAGGAGACGCGCTGCCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCCACTCTGGAAGTTATCCAGAAAAAGA

upper sequence: LOC_Os01g59990.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
--------catgtgcagttatccgagttttctgcagcaactggctggaattgctgccttatatcatgcccttgctgctatttttctgaatttcaacgttgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGA
         |    |||| ||  |  | |  |        ||       ||| |   ||  ||    ||     || ||   |||| ||  ||    ||    | |||||          || ||||| ||||  ||| | ||  |||||||||||||||||||| |||| ||||||||||||||  ||||||| || || |||||||
gtaaaaaaaaaactcagtaatttggatctgttttgttgtttgtac---tttgttttttttcattgatcctgatttgttaacattctaaaactctgt-ttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA

upper sequence: LOC_Os01g59990.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv16s0100g00650.t01 (Vitis vinifera), 3'ss of exon 2
----------------catgtgcagttatc--cgagttttctgcagcaac----tggctggaattgctgccttatatcatgcccttgctgct-------------atttttctgaatttcaacgttgcactg-----tagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGA
                  |||   | ||||  |   |||| |||          ||| || || |||    | |  || | ||||   || |             |||   |||| | |      ||| ||       ||||||||   || |||||||| ||||||| ||| |||||| | ||||||||||||||| |||| || || ||||| ||| |||| ||||| || ||||  |
gtaatcaaattttaaaattgtttggctatcaactcattttttgcctttttattgtgggtgaaagtgcattttcacttc-taccctatttgtttgggaagtggctaattcagctgattcttttttctgctctcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCATACTCAAGGTCCATAGTGGGTGCCACATTGGAGGTTATACAGAAGAGAA

upper sequence: LOC_Os01g59990.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv13s0074g00140.t01 (Vitis vinifera), 3'ss of exon 3
----catgtgcagttatccgagttttctgcagcaactggctggaattgctgccttatatcatgcccttg----ctgctatttttctgaatt--tcaacgttgcact-gtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGA
     |||| |  |||       ||  | ||   |   | | |   |       | |||||||   |||     | | | ||||||   ||  || |  |   |||   |||||||   ||| || ||||| ||||||||||||||  ||||||||||||||| |||  | || || |||||| ||||  |||| |  || || |||| ||
gtggaatgt-cttttaatgatacttcattcattgaaaagtttgctatatgcagctgtatcatgtggttggacattacaaattttcttctttcatctatatgcaactcacagGACATAGCTGCGGAGGCTGTGAAGAAGAGGCGTCGTGCCACCAAGAAGCCATTCTCCAGATCCATAGTTGGTACTACCTTGGAGGCGATACAGAAGAGGA

upper sequence: LOC_Os01g59990.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv08s0007g04210.t01 (Vitis vinifera), 3'ss of exon 3
catgtgcagttatccgagttttctgcagcaactggctggaattgctgccttatatcatgccctt--gctgctattt-ttctgaatttcaac----gttgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGA
  |||  |  | |    ||    | | | ||       ||||  |  |  |  || |||    |  |  | ||||| || ||| |  | |     |||       |||| |||  |   || ||||| ||||||||||||||  ||||||| ||||| |||||  |||| ||||| ||||||||| |||| |||||||| ||||  |
--tgtatatgtgttttggtcactttctggaaa-----agaatatccactatggattatgtttgttgggagttatttgttttgagtcactaattgggttaatgctcagGATATTGCTCAAGAGGCTGTAAAGAAGAGGCGTCGTGCCACCAAAAAGCCCTACTCTAGGTCCATTGTGGGTGCTACATTGGAGGTTATCCAGAAGAGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15847107|gb|BI795383.1|BI795383
EST:     CCTGGACAGCTATGTACAGGAAGCAGCACAAGAA-                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCATCCAAGAA-CC
genomic: CCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCA-CCAAGAAGCC
EST: gi|30228671|gb|CB966561.1|CB966561
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|38476375|gb|CF960508.1|CF960508
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|38480261|gb|CF964350.1|CF964350
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88321645|gb|CI672786.1|CI672786
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88237518|gb|CI237367.1|CI237367
EST:     TACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: TACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|58604519|gb|CK015047.1|CK015047
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88207955|gb|CI207804.1|CI207804
EST:     CAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: CAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88240764|gb|CI239926.1|CI239926
EST:     GTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: GTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88351281|gb|CI623503.1|CI623503
EST:     AGCCTGCCAAGCTTACCTGGAAAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|58591772|gb|CF990080.1|CF990080
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88576762|gb|CI673287.1|CI673287
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|163922730|gb|EG712201.1|EG712201
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|163929077|gb|EG713022.1|EG713022
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|55434318|gb|CV730280.1|CV730280
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCGCCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88579651|gb|CI688661.1|CI688661
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88336434|gb|CI649021.1|CI649021
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|14981286|gb|BI305964.1|BI305964
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88351707|gb|CI617432.1|CI617432
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88402814|gb|CI613262.1|CI613262
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88724029|gb|CI749288.1|CI749288
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88330914|gb|CI638322.1|CI638322
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|218481886|gb|FG948632.1|FG948632
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|86908394|gb|CI300774.1|CI300774
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88210649|gb|CI210498.1|CI210498
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88237430|gb|CI237279.1|CI237279
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|87018104|gb|CI275918.1|CI275918
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|89193914|gb|CI018232.1|CI018232
EST:     AGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88350195|gb|CI623133.1|CI623133
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|55439109|gb|CV732856.1|CV732856
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|87029957|gb|CI267970.1|CI267970
EST:     CTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: CTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|55434794|gb|CV730521.1|CV730521
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88209988|gb|CI209837.1|CI209837
EST:     CCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: CCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88350259|gb|CI623197.1|CI623197
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|55433285|gb|CV729700.1|CV729700
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|117244000|gb|CT848387.1|CT848387
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|86594449|gb|CI253348.1|CI253348
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|55431287|gb|CV728657.1|CV728657
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88328544|gb|CI676754.1|CI676754
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|163928530|gb|EG711415.1|EG711415
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTG
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTG
EST: gi|163928807|gb|EG711919.1|EG711919
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88327884|gb|CI648283.1|CI648283
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|58602306|gb|CK012834.1|CK012834
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|86854019|gb|CI252010.1|CI252010
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|33806682|gb|CF329222.1|CF329222
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88743518|gb|CI767026.1|CI767026
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88404907|gb|CI685341.1|CI685341
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|58681869|gb|CK070556.1|CK070556
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|58593374|gb|CF991682.1|CF991682
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCAGCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88577347|gb|CI673923.1|CI673923
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|33654059|gb|CF276673.1|CF276673
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88571646|gb|CI663019.1|CI663019
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88327281|gb|CI645058.1|CI645058
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|33690835|gb|CF319074.1|CF319074
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|33690719|gb|CF318958.1|CF318958
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88238659|gb|CI238508.1|CI238508
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|55440029|gb|CV733325.1|CV733325
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|88688905|gb|CI732481.1|CI732481
EST:     AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: AGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
EST: gi|157650326|gb|EX449960.1|EX449960
EST:     GTACAGGAAGCAGCACAAGAAG                         GACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA
genomic: GTACAGGAAGCAGCACAAGAAGgtgcaacatt ... tgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccttatatcatgcccttgctgctatttttctgaatttcaacgttgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGA
                        tatttttctgaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catgtgcagttatccgagttttctgcagcaactggctggaattgctgccttatatcatgcccttgctgctatttttctgaatttcaacgttgcactgtagGACATTCATGCTGAAGCTGTCAAGAAGAGGCGTCGCACCACCAAGAAGCCATACTCACGGTCAATTGTTGGTGCTACACTGGAAGTTATCCAAAAGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
catgtgc
- - - - - - - - - - - ctgcagc
- - - - - - - - - - - - - - - - tggctgg
- - - - - - - - - - - - - - - - - - - - - tgctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgctg