Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGAACTTTGCCGTTTTAGTGGGCAGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctctttgtccattgaagtttgaaagtccaatctatgattaagttagggggtcttttgcatacaatttcaagtgttctcttctgcag

Basic information

species Oryza sativa
transcript LOC_Os01g59990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59990.2 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv16s0100g00650.t01 (Vitis vinifera), 5'ss of exon 1
-----------GACTGAACTTTGCCGTTTTAGTGGGCAGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctctttgtccattgaagtttgaaa--gtccaatctatgattaagttagggggtcttttgcatacaa----tttcaagtgttctctt--ctgcag-------------------------------------------
           ||||||||| ||||| || ||||||   ||||||||||| || ||||||||||| ||  ||||  |||||||||||||||       ||    ||  | ||||     |||      |||  | | | || |  | |  | ||| |||    || |  || ||  |||   |  |                                            
ATGGATTTCAGGACTGAACTCTGCCGCTTCAGTGGGGCCAAGATATACCCTGGTAAGGGTATCAGATTTGTTCGGTCTGATTCCCAGgtaaaatgtgatgatattttcaatttggttctgtcaggggcatgtatcattcagagcatatcctacattcaaacgcttccctgtattggcttaattttacttcaattactgtaactgaatagcatctgtttcatttatatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30228671|gb|CB966561.1|CB966561
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|38476375|gb|CF960508.1|CF960508
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|38480261|gb|CF964350.1|CF964350
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88321645|gb|CI672786.1|CI672786
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|58604519|gb|CK015047.1|CK015047
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88351281|gb|CI623503.1|CI623503
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|58591772|gb|CF990080.1|CF990080
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88576762|gb|CI673287.1|CI673287
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|163922730|gb|EG712201.1|EG712201
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|163929077|gb|EG713022.1|EG713022
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|55434318|gb|CV730280.1|CV730280
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTTATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88579651|gb|CI688661.1|CI688661
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88336434|gb|CI649021.1|CI649021
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|14981286|gb|BI305964.1|BI305964
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88351707|gb|CI617432.1|CI617432
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88402814|gb|CI613262.1|CI613262
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88724029|gb|CI749288.1|CI749288
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88330914|gb|CI638322.1|CI638322
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|218481886|gb|FG948632.1|FG948632
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|86908394|gb|CI300774.1|CI300774
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|87018104|gb|CI275918.1|CI275918
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88350195|gb|CI623133.1|CI623133
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|55439109|gb|CV732856.1|CV732856
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|55434794|gb|CV730521.1|CV730521
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88350259|gb|CI623197.1|CI623197
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|55433285|gb|CV729700.1|CV729700
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|117244000|gb|CT848387.1|CT848387
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|86594449|gb|CI253348.1|CI253348
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|55431287|gb|CV728657.1|CV728657
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCCGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88328544|gb|CI676754.1|CI676754
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|163928807|gb|EG711919.1|EG711919
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88327884|gb|CI648283.1|CI648283
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|58602306|gb|CK012834.1|CK012834
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|86854019|gb|CI252010.1|CI252010
EST:     ACCCAGGCAAGGGTATCA-GTCTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: ACCCAGGCAAGGGTATCAGGT-TCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|33806682|gb|CF329222.1|CF329222
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTTCCAG                         G-TTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88743518|gb|CI767026.1|CI767026
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88404907|gb|CI685341.1|CI685341
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|58681869|gb|CK070556.1|CK070556
EST:     GAAGATATACCCAGGCAAGGGTATCAGGTTCAGTTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: GAAGATATACCCAGGCAAGGGTATCAGGTTCA-TTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|58593374|gb|CF991682.1|CF991682
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCGCAG                         GTTTTTCTG-TTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88577347|gb|CI673923.1|CI673923
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGGCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|33654059|gb|CF276673.1|CF276673
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88571646|gb|CI663019.1|CI663019
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88327281|gb|CI645058.1|CI645058
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|33690835|gb|CF319074.1|CF319074
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|33690719|gb|CF318958.1|CF318958
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|55440029|gb|CV733325.1|CV733325
EST:     AGAAGATATACCCAGGCAAGGGTATCTTGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|88688905|gb|CI732481.1|CI732481
EST:     AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAG                         GTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctct ... tcttctgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTGAACTTTGCCGTTTTAGTGGGCAGAAGATATACCCAGGCAAGGGTATCAGGTTCATTCGTGCTGATTCCCAGgtaaccctctttgtccattgaagtttgaaagtccaatctatgattaagttagggggtcttttgcatacaatttcaagtgttctcttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT