Sequence
atgc intronic sequence ATGC exonic sequence...aagaaaacaatgatttacatccttcaatttacctttatatttttttacaattctgttgtgattttcacacagatataaacttctgttgatcatttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAAAGATTCACCACTGCAAACTCTGGAACCGTCCACCCTCCAAGCACTTTA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g56640.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g56640.3 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G079468_T01 (Zea mays), 3'ss of exon 11
aagaaaacaatgatttacatccttcaatttacctttatatttttttacaattctgttgtgattttcacacagatataaacttctgttgatcatttaacagGTCCTGAGCAATTGAAGCAGA---AGCAGGTTAATTCTGATTCATCTGACAAAAAAGATTCACCACTGCAAACTCTGGAACCGTCCACCCTCCAAGCACTTTA---------------------------
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----------------------------taacggctacatttgtatttgtttttattatgtttctttgtatcctattcccttttgatga-cagcaaacaatttatcaatttataatttatgtttatcagGTTTCCAGCTATTCAATTTGCAAAAA-GATTCACCACTACGAACTCTGGAACCCTCCACTCTGCAAGCACTCTATGAACTCATCTCACTGGTCCATGATGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86868530|gb|CI343102.1|CI343102EST: CAGATGAAGAATCAGGAGG GTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAA
genomic: CAGATGAAGAATCAGGA-Ggtcaatattt ... catttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacaattctgttgtgattttcacacagatataaacttctgttgatcatttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAAAGATTCACCACTGCAAACTCTGGAACCGTCCACCCTCCAAGCACTTTA
tgttgat putative branch site (score: 4)
atataaactt TA-rich tract