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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATTCTCTTGAACATTTCATACAGTAACTTTGTGGCCTCCCTCATCATCCCCATATCTGTACCCGATGCCTGTGTATGGGGAGGCCTCCAACCATAGgtaaaaaaagcctttccacacaggaactgtttcaatttatccagttgtcttggactaattgaaatttatcagttctgagatgccttactctgatctcaaaatatttggcag

Basic information

species Oryza sativa
transcript LOC_Os01g56640.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56640.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G079468_T01 (Zea mays), 5'ss of exon 7
CTTCATTCTCTTGAACATTTCATACAGTAACTTTGTGGCCTCCCTCATCATCCCCATATCTGTACCCGATGCCTGTGTATGGGGAGGCCTCCAACCATAGgtaaaaaaagcctttccacacaggaactgttt---caatttatccagttgtcttggactaattgaaatttatcagttctgagatgccttactctgatctcaaaatattt-ggcag
                           | |||||||||||||| ||  |||||||||   | |||||| ||||||||||||| |||||||||||||| ||||||||       |||  | || ||| || ||    |||||   |  || | || ||  ||   ||||||  ||||    | ||  ||   ||| ||||    || ||| |||||
---------------------------TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAGgtaaaa-----tcttctgctcatgaagtgcttaattaatttgaactatttttttagaaaaac-aaaatttggcagtaa-aaaatatctc-ttcttatcttgctatcttttggcag