1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTGGTGGATAAGGAGATGgtacgccccattgcccctctatttgtgcattggtacaagatctttttttctttattttaaattttgtttatgccactggtttcaaatagccatctgatca...
species | Oryza sativa |
transcript | LOC_Os01g56640.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGATTGGTGGATAAGGAGATG AACAAAATGGTGCAGGAGAATTCTGTTTCTTGTTCAAAAGGTACAACTGTTEST: gi|4715422|gb|AU056539.1|AU056539
genomic: AGATTGGTGGATAAGGAGATGgtacgcccca ... catgaggcagAACAAAATGGTGCAGGAGAATTCTGTTTCTTGTTCAAAAGGTACAACTGTT
EST: AGATTGGTGGATAAGGAGATG AACAAAATGGTGCAGGAGAATTCTGTTTCTTGTTCAAAAGGTACAACTGTTEST: gi|33680312|gb|CF308551.1|CF308551
genomic: AGATTGGTGGATAAGGAGATGgtacgcccca ... catgaggcagAACAAAATGGTGCAGGAGAATTCTGTTTCTTGTTCAAAAGGTACAACTGTT
EST: GAGCAGATTGGTGGATAAGGAGATG AACAAAATGGTGCAGGAGAATTCTGTTTCTTGTTCAAAAGGTACAACTGTTEST: gi|5803388|gb|AI978336.1|AI978336
genomic: GAGCAGATTGGTGGATAAGGAGATGgtacgcccca ... catgaggcagAACAAAATGGTGCAGGAGAATTCTGTTTCTTGTTCAAAAGGTACAACTGTT
EST: GCAGATTGGTGGATAAGGAGATG AACAAAATGGTGCAGGAGAATTCTGTTTCTTGTTCAAAAGGTACAACTGTT
genomic: GCAGATTGGTGGATAAGGAGATGgtacgcccca ... catgaggcagAACAAAATGGTGCAGGAGAATTCTGTTTCTTGTTCAAAAGGTACAACTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGTGGATAAGGAGATGgtacgccccattgcccctctatttgtgcattggtacaagatctttttttctttattttaaattttgtttatgccactggtttcaaatagccatctgatca
- TGGTGG
- GGTGGA
- - - - - AAGGAG
- - - - - AGGAGA
- - - - - - GGAGAT
- - - - - - GAGATG