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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTTTGTGGCCTCCCTCATCATCCCCATATCTGTACCCGATGCCTGTGTATGGGGAGGCCTCCAACCATAGgtaaaaaaagcctttccacacaggaactgtttcaatttatccagttgtcttggactaattgaaatttatcagttctgagatgccttactctgatctcaaaatatttggcag

Basic information

species Oryza sativa
transcript LOC_Os01g56640.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56640.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G079468_T01 (Zea mays), 5'ss of exon 7
TAACTTTGTGGCCTCCCTCATCATCCCCATATCTGTACCCGATGCCTGTGTATGGGGAGGCCTCCAACCATAGgtaaaaaaagcctttccacacaggaactgttt---caatttatccagttgtcttggactaattgaaatttatcagttctgagatgccttactctgatctcaaaatattt-ggcag
| |||||||||||||| ||  |||||||||   | |||||| ||||||||||||| |||||||||||||| ||||||||       |||  | || ||| || ||    |||||   |  || | || ||  ||   ||||||  ||||    | ||  ||   ||| ||||    || ||| |||||
TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAGgtaaaa-----tcttctgctcatgaagtgcttaattaatttgaactatttttttagaaaaac-aaaatttggcagtaa-aaaatatctc-ttcttatcttgctatcttttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33793205|gb|CF322483.1|CF322483
EST:     TCCCCATATCTGTACCCGATGCCTGTGTATGGGGAGGCCTCCAACCATAG                         TTCTGTCAGCATCGACGAACCAGATTATTCAAGGTACACAAGAGCAAGATA
genomic: TCCCCATATCTGTACCCGATGCCTGTGTATGGGGAGGCCTCCAACCATAGgtaaaaaaag ... tatttggcagTTCTGTCAGCATCGAGGAACCAGATTATTCAAGGTACACAAGAGCAAGATA