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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCGCGCGGCTGGACGCCGGCCTCCGCGCCGCGCGGTTCGCGTCGCCGCCTTCTGCCGACGAGTTCGCGGCCGCCGTCGAGCCCAGGAACGCCCCCGCGgtagagagcctagcctctccacgccccgaatcctctcgaagctccccacttcccttcccttcccttttaccgctcctcccctttctgcttccatcagttgttgatacaaccccgtgctatgttctccccgtcag

Basic information

species Oryza sativa
transcript LOC_Os01g56640.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56640.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G079468_T01 (Zea mays), 5'ss of exon 1
GGGCGCGCGGCTGGACGCCGGCCTCCGCGCCGCGCGGTTCGCGTCGCCGCCTTCTGCCGACGAGTTCGCGGCCGCCGTCGAGCCCAGGAACGCCCCCGCGgtagagagcctagcctctccacgccccgaatcctctcgaagctccccacttcccttcccttcccttttaccgctcctcccctttctgcttccatcagttgttgatacaaccccgtgctatgttctccccgtcag
||||||  || ||||||||||||||||||| || || ||| |||||||||| |||||||||||||| ||||| |  |||||||||| ||||| ||| ||||||            ||      |||     | |   |||| ||  |      |    |||    | | ||  |            || ||  ||||                                     
GGGCGCTAGGTTGGACGCCGGCCTCCGCGCTGCCCGCTTCTCGTCGCCGCCGTCTGCCGACGAGTTTGCGGCAGATGTCGAGCCCAAGAACGTCCCTGCGgtaa-----------tccttctaccctacgccttactgaagttctgcttccgtcaggtcttgatatgttcccgtgtggttaaaatcgcgtct-tcag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33793205|gb|CF322483.1|CF322483
EST:     CGTCGAGCCCAGGAACGCCCCCGCG                         GTGTTTCGTGGCGTGGTGAAGGATTGGACGGCCTCCTCTCGGTGGGATCCT
genomic: CGTCGAGCCCAGGAACGCCCCCGCGgtagagagcc ... tccccgtcagGTGTTTCGTGGCGTGGTGAAGGATTGGACGGCCTCCTCTCGGTGGGATCCT