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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctattagaaatgtttacaactagtatattcaaacaagtatttcaggtataccctggtgcagtttacatgggaataatctttccatattaaaatatgcagTTTGGGGTGGTGATCCTGTTTACCCAACCATTAACTACGTTCATGATCCTGACGAAGTAGCGGACTACAGGGGTCCAGAATTTCATGAGCCTACACCTGA

Basic information

species Oryza sativa
transcript LOC_Os01g56350.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58652973|gb|CK041653.1|CK041653
EST:     ACAACGAGATCCTTTGGCAATGAGGATGCGGGAAGACCAGATCAAACAGA                         TTTGGGGTGGTGATCCTGT
genomic: ACAACGAGATCCTTTGGCAATGAGGATGCGGGAAGACCAGATCAAACAGAgtatatcttc ... aaatatgcagTTTGGGGTGGTGATCCTGT
EST: gi|699654|gb|D45945.1|D45945
EST:     ACAACGAGATCCTTTGGCAATGAGGATGCGGGAAGACCAGATCAAACAGA                         TTTGGGGTGGTGATCCTGTTTACCCAACCATTAACTACGTTCATGATCCTG
genomic: ACAACGAGATCCTTTGGCAATGAGGATGCGGGAAGACCAGATCAAACAGAgtatatcttc ... aaatatgcagTTTGGGGTGGTGATCCTGTTTACCCAACCATTAACTACGTTCATGATCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtataccctggtgcagtttacatgggaataatctttccatattaaaatatgcagTTTGGGGTGGTGATCCTGTTTACCCAACCATTAACTACGTTCATGATCCTGACGAAGTAGCGGACTACAGGGGTCCAGAATTTCATGAGCCTACACCTGA
                           aataatctttccatat  TA-rich tract