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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGgtaagtgaaagttgctacactgtaattggaggttagaagttaaaaatcatgcattgactgcaggtgatcggatagttatgtactattattagatgtacta...

Basic information

species Oryza sativa
transcript LOC_Os01g56230.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56230.5 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G825226_T03 (Zea mays), 5'ss of exon 7
GTTTCTTGATACTGTTGGAATGAAAAGATCGAAAGCCTATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGgtaagtgaaagttgctacactgtaattggaggttagaagttaaaaatcatgcattgactgcaggtgatcggatagttatgtactattattagatgtacta------
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GTTCCTTGATACCGCTGGACTGAAAAAATCCAAGGCCTATCTTGTCAATGGTGTTACGATGTTTATTGCATGGCTGgtatgt------tactacaacgtaatttcattctgcaagttatgaatgacacattatctgctatttgttatagaatattctaataagctttaatataatgttgtgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88280762|gb|CI401960.1|CI401960
EST:     TATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTG                         GTTAAGCAAATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGCCCACA
genomic: TATCTTGTCAATGGTGTTACAATGTTTGTTGCATGGCTGgtaagtgaaa ... ttattgacagGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATATTCGCTGTGCCCACA