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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGgtaacatatgtcactgtttatccgcattgaataataggttatgctgatatatacattttctccttttgccacatgttagctgaattaaatctgtttag

Basic information

species Oryza sativa
transcript LOC_Os01g56230.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56230.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G825226_T04 (Zea mays), 5'ss of exon 5
AATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGgtaacatatgtcactgttt-atccgcattgaataataggttatgctgatatatacattttctccttttgccacatgttagct--gaattaaatctg--tttag-
  ||||||| ||||| || ||||||||||||||||||||||||||||||||||| | ||||||   |||||||||||| || |||||||| ||  ||||||||| |  ||||| | ||| || | |||| || || ||  |||| |   || |||   |   | | |  ||| |  ||  ||  |  ||   |  |  ||||| 
GGTGTCAGTGTACCTGGTTTTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctgtcaatattttattcccattcaagaa-agtctatgttatcatttac---tatccatgtgcccaaaccttgactttgggttttgtagggttttagc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660431|gb|CB656706.1|CB656706
EST:     ATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGG                         GTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTAT
genomic: ATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGgtaacatatg ... atctgtttagGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTAT
EST: gi|300215972|gb|HO088598.1|HO088598
EST:     ATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGG                         GTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTAT
genomic: ATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGgtaacatatg ... atctgtttagGTTTCTCTGGGGTACTTCATCGCTGACCTTGCTATGTTATCCTGGGCTTAT