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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttccagatgatctagcttcaaatgtgcagtttttcgattgttggaataagagcgttttcatgataatacaataaatcaacttcag

Basic information

species Oryza sativa
transcript LOC_Os01g55570.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55409935|gb|CV722311.1|CV722311
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88573876|gb|CI665645.1|CI665645
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88346141|gb|CI634014.1|CI634014
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88342540|gb|CI637116.1|CI637116
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAG
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAG
EST: gi|88574306|gb|CI666075.1|CI666075
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|14714366|gb|AU198287.1|AU198287
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
EST: gi|88348094|gb|CI637555.1|CI637555
EST:     TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAG                         GTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA
genomic: TAGGATTTGCAGGGATTGCCGCATTATGGGCTTCTATAAATCTTGTAGAGgtaacttcca ... tcaacttcagGTCATCGACAAGCTTCCTGTTCTCCCTCTACTCTTTGAATTAATTGGCATA