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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGATGAGGAGTCGCAATGTCGTCGCTGCAAAGGCTGCGCAGGACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttttttatctctactaatcaatttgagctttgaggtagatagtaagttcaggaaccctgatgacattggcaatttttttttctgacgcaagtt...

Basic information

species Oryza sativa
transcript LOC_Os01g55570.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55409935|gb|CV722311.1|CV722311
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88573876|gb|CI665645.1|CI665645
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|86903736|gb|CI300590.1|CI300590
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88346141|gb|CI634014.1|CI634014
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88342540|gb|CI637116.1|CI637116
EST:     ACAGTTCAAAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAAACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88574306|gb|CI666075.1|CI666075
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88368616|gb|CI648094.1|CI648094
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|14714366|gb|AU198287.1|AU198287
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88296188|gb|CI667578.1|CI667578
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|88348094|gb|CI637555.1|CI637555
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG
EST: gi|33672558|gb|CF300797.1|CF300797
EST:     ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCG                         TTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGG-
genomic: ACAGTTCAGAACCGTCATCCGGGAGCGTTGTGAAGTATGTCCAGAGTTCGgtgagttttt ... actgaaacagTTCAGCAGTCCTGAAGACCTCTTTGCTCTAGCTGGTATAGGATTTGCAGGG