1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttggataacacctacatgtagaatttgtttggctcctaaaataattggttatggtactgataatgatatatagatgtgctaactttaatttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATTTGATGAAG
species | Oryza sativa |
transcript | LOC_Os01g55270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88215419|gb|CI215268.1|CI215268
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86534361|gb|CI174567.1|CI174567
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88205759|gb|CI205608.1|CI205608
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88242356|gb|CI242205.1|CI242205
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86846937|gb|CI283075.1|CI283075
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|87016782|gb|CI284116.1|CI284116
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88213586|gb|CI213435.1|CI213435
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|58598428|gb|CK008956.1|CK008956
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88413867|gb|CI528639.1|CI528639
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAACCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|8528344|gb|AU093159.1|AU093159
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86528882|gb|CI169088.1|CI169088
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCGAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86507959|gb|CI150592.1|CI150592
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88436817|gb|CI521568.1|CI521568
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88211026|gb|CI212459.1|CI212459
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86545340|gb|CI185546.1|CI185546
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88208627|gb|CI208476.1|CI208476
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86424791|gb|CI063552.1|CI063552
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|8857314|gb|AU094632.1|AU094632
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86592742|gb|CI268407.1|CI268407
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|87022484|gb|CI267621.1|CI267621
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88203165|gb|CI203014.1|CI203014
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88206648|gb|CI206497.1|CI206497
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88206369|gb|CI206218.1|CI206218
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86846977|gb|CI283096.1|CI283096
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86508473|gb|CI151106.1|CI151106
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|87023444|gb|CI284591.1|CI284591
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86593125|gb|CI255587.1|CI255587
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: CAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86258053|gb|CI064406.1|CI064406
genomic: CAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTC-AAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86422034|gb|CI059607.1|CI059607
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|86525093|gb|CI165299.1|CI165299
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|88211010|gb|CI212443.1|CI212443
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|66916223|gb|CX103071.1|CX103071
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|3762561|gb|AU029313.1|AU029313
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATEST: gi|87030335|gb|CI252612.1|CI252612
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
EST: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAG TTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
genomic: ACAAAGCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGgtaattgtct ... ttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGAT
ttggttatggtactgataatgatatatagatgtgctaactttaatttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATTTGATGAAG
ataatgatatatagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggataacacctacatgtagaatttgtttggctcctaaaataattggttatggtactgataatgatatatagatgtgctaactttaatttgctgacagTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAATGTCTGGAATTATGGATTTGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - ctacatg
- - - - - - - - - - - - - - - -ggctcct
- - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgtgc