1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCGGCTGGACCTGGAGGAGCTGCGGCGGCTGGAGGGCCTCGCCAAGCGGCCCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcatttccttttttctttcttttttttttcactctcgcgatcttcttcgccgattcgtttcggggcttgggtggtgcgtatggattcggaattcctgacgtttgtctttgtgtgcggatag
species | Oryza sativa |
transcript | LOC_Os01g55270.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCGCGTCCTCTCCGCCCTCGCCAANGAGATCCGCGCCGTCGATGCCAAG CTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCGEST: gi|2442237|gb|C74008.1|C74008
genomic: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcat ... gtgcggatagCTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
EST: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAG CTGGCGAAAGCGACCGAGCCGCA-G-ACCGCA-GCCGTCGCGGCGGGATCGEST: gi|58662060|gb|CK050740.1|CK050740
genomic: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcat ... gtgcggatagCTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
EST: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAG CTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCGEST: gi|88761044|gb|CI770600.1|CI770600
genomic: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcat ... gtgcggatagCTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
EST: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAG CTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCGEST: gi|218499436|gb|FG950951.1|FG950951
genomic: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcat ... gtgcggatagCTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
EST: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAG CTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCGEST: gi|218480065|gb|FG947852.1|FG947852
genomic: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcat ... gtgcggatagCTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
EST: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAG CTGGCGAAAGCAACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCGEST: gi|88696075|gb|CI739650.1|CI739650
genomic: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcat ... gtgcggatagCTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
EST: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAG CTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCGEST: gi|88448600|gb|CI693991.1|CI693991
genomic: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcat ... gtgcggatagCTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
EST: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAG CTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCGEST: gi|66916223|gb|CX103071.1|CX103071
genomic: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcat ... gtgcggatagCTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
EST: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAG CTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
genomic: CCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcat ... gtgcggatagCTGGCGAAAGCGACCGAGCCGCAGGCACCGCAGGCCGTCGCGGCGGGATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCTGGACCTGGAGGAGCTGCGGCGGCTGGAGGGCCTCGCCAAGCGGCCCCGCGTCCTCTCCGCCCTCGCCAACGAGATCCGCGCCGTCGATGCCAAGgttgtttcatttccttttttctttcttttttttttcactctcgcgatcttcttcgccgattcgtttcggggcttgggtggtgcgtatggattcggaattcctgacgtttgtctttgtgtgcggatag
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